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Browse 499 topics across software, annotation, experiment, and workflow packages.

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Release: Showing tree for 3.23

AnnotationData(938)

ChipManufacturer(404)

AffymetrixChip(342)

AgilentChip(17)

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CodelinkChip(12)

IlluminaChip(29)

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ag(3)

hs25kresogen(1)

illuminaHumanv1(1)

illuminaHumanv2(1)

illuminaMousev1(1)

illuminaMousev1p1(1)

illuminaRatv1(1)

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pedbarrayv10(1)

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MicroRNAArray(5)

MultiChannel(7)

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TissueMicroarray(2)

mRNAMicroarray(24)

MicrotitrePlateAssay(14)

Sequencing(938)

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HiC(36)

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WholeGenome(40)

SingleCell(346)

qPCR(13)

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WorkflowStep(1,321)

MultipleSequenceAlignment(19)

Annotation(152)

BatchEffect(76)

ExperimentalDesign(34)

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Normalization(188)

GO(76)

KEGG(55)

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Preprocessing(276)

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ReportWriting(39)

Visualization(614)

AnnotationWorkflow(4)

BasicWorkflow(5)

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EpigeneticsWorkflow(6)

GeneExpressionWorkflow(13)

GenomicVariantsWorkflow(0)

ImmunoOncologyWorkflow(20)

ProteomicsWorkflow(1)

ResourceQueryingWorkflow(2)

SingleCellWorkflow(10)

SpatialWorkflow(1)

ChipOnChip

12 packages

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Package	Category	Version	Status
ChIPanalyserBioc ChIPanalyser: Predicting Transcription Factor Binding Sites	software	1.34.0	current
TFEA.ChIPBioc TFEA.ChIP, a Tool Kit for Transcription Factor Enrichment	software	1.32.0	current
epidecodeRBioc epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation	software	1.20.0	current
epiregulon.extraBioc Companion package to epiregulon with additional plotting, differential and graph functions	software	1.8.0	current
geneXtendeRBioc Optimized Functional Annotation Of ChIP-seq Data	software	1.37.0	current
motifTestRBioc Perform key tests for binding motifs in sequence data	software	1.8.1	current
peakCombinerBioc The R package to curate and merge enriched genomic regions into consensus peak sets	software	1.2.0	current
profileplyrBioc Visualization and annotation of read signal over genomic ranges with profileplyr	software	1.28.3	current
pumaBioc Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)	software	3.54.0	current
qseaBioc IP-seq data analysis and vizualization	software	1.38.0	current
recoupBioc An R package for the creation of complex genomic profile plots	software	1.40.0	current
rmspcBioc Multiple Sample Peak Calling	software	1.18.0	current