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qsea

Bioc current

IP-seq data analysis and vizualization

v1.38.0 · software · GPL-2
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Release Lineage

Entered 3.4 · Oct 18, 2016

Current · Requires R 4.6

1.0 In 20 of 49 releases 3.23

Description

qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.

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Topics

Software › Technology › Sequencing
Software › AssayDomain › DNAMethylation
Software › AssayDomain › CpGIsland
Software › Technology › Sequencing › ChIPSeq
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › Normalization
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Visualization
Software › AssayDomain › CopyNumberVariation
Software › Technology › Microarray › ChipOnChip
Software › BiologicalQuestion › DifferentialMethylation

Depended on by (2)

Bioconductor (2)

MEDIPSData mesa

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