Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

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Package	Category	Version	First Release	Last Release	Status
ChIPanalyser Bioc ChIPanalyser: Predicting Transcription Factor Binding Sites	software	1.34.0	3.6	3.23	current
TFEA.ChIP Bioc TFEA.ChIP, a Tool Kit for Transcription Factor Enrichment	software	1.32.0	3.7	3.23	current
epidecodeR Bioc epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation	software	1.20.0	3.13	3.23	current
epiregulon.extra Bioc Companion package to epiregulon with additional plotting, differential and graph functions	software	1.8.0	3.19	3.23	current
geneXtendeR Bioc Optimized Functional Annotation Of ChIP-seq Data	software	1.37.0	3.4	3.23	current
motifTestR Bioc Perform key tests for binding motifs in sequence data	software	1.8.1	3.19	3.23	current
peakCombiner Bioc The R package to curate and merge enriched genomic regions into consensus peak sets	software	1.2.0	3.22	3.23	current
profileplyr Bioc Visualization and annotation of read signal over genomic ranges with profileplyr	software	1.28.3	3.9	3.23	current
puma Bioc Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)	software	3.54.0	2.0	3.23	current
qsea Bioc IP-seq data analysis and vizualization	software	1.38.0	3.4	3.23	current
recoup Bioc An R package for the creation of complex genomic profile plots	software	1.40.0	3.3	3.23	current
rmspc Bioc Multiple Sample Peak Calling	software	1.18.0	3.14	3.23	current