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recoup

Bioc current

An R package for the creation of complex genomic profile plots

v1.40.0 · software · GPL (>= 3)
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

recoup calculates and plots signal profiles created from short sequence reads derived from Next Generation Sequencing technologies. The profiles provided are either sumarized curve profiles or heatmap profiles. Currently, recoup supports genomic profile plots for reads derived from ChIP-Seq and RNA-Seq experiments. The package uses ggplot2 and ComplexHeatmap graphics facilities for curve and heatmap coverage profiles respectively.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software
Software › AssayDomain › GeneExpression
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › QualityControl
Software › Technology › Sequencing › RNASeq
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › Technology › Sequencing › ATACSeq
Software › Technology › Microarray › ChipOnChip
Software › WorkflowStep › Alignment
Software › Infrastructure › DataImport

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