Bioconductor Packages

Adaptive Robust Regression normalization for Illumina methylation data

BEAT - BS-Seq Epimutation Analysis Toolkit

Correction of batch effects in DNA methylation data

Model higher-order methylation profiles

Processing and analyzing bisulfite sequencing data

Coordinate Covariation Analysis

Explores Cancer Testis Genes

Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC

Finds DAMEs - Differential Allelicly MEthylated regions

Differentially Methylated Regions Caller

Methylation array and sequencing spatial analysis methods

Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Quality control and analysis tools for Illumina DNA methylation BeadChip

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models

Epigenetic Dissection of Intra-Sample-Heterogeneity

EpiMix: an integrative tool for the population-level analysis of DNA methylation

Annotation package for Illumina Infinium DNA methylation probes

Annotation package for Illumina Infinium DNA methylation probes

Prediction of gestational age with Illumina HumanMethylation450 data

GEM: fast association study for the interplay of Gene, Environment and Methylation

Processing Various Types of Data on GEO and TCGA

Tools for HELP data analysis

Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies

The removal of batch effects from datasets using a PCA and constrained optimisation based technique

Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)

Annotation for Illumina's 27k methylation arrays

Annotation for Illumina's 450k methylation arrays

Manifest for Illumina's EPIC methylation arrays

Detection of scatterplots with L-shaped pattern

MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

Model-based analysis of DNA methylation data

Perform methylation analysis

Muscle Epigenetic Age Test

DNA IP-seq data analysis

Modelling Experimental Data from MeDIP Enrichment

Methylation-Based Inference of Regulatory Activity

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Analytical Tools for MassArray Data

Bayesian clustering and imputationa of single cell methylomes

A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes

Visual and interactive quality control of large Illumina DNA Methylation array data sets

Segmentation of Bis-seq data

Identify oncogenes and tumor suppressor genes from omics data

Identify oncogenes and tumor suppressor genes from omics data

Visualise methylation data from Oxford Nanopore sequencing

Disk-backed Representation of ONT bedMethyl Files

Repetitive Element Methylation Prediction

The Cancer Genome Atlas Data Integration

RnBeads

Smooth modeling of bisulfite sequencing