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GeoTcgaData

Bioc current

Processing Various Types of Data on GEO and TCGA

v2.12.0 · software · Artistic-2.0
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Release Lineage

Entered 3.17 · Apr 26, 2023

Current · Requires R 4.6

1.0 In 7 of 49 releases 3.23

Description

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.

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Topics

Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression
Software › Technology › Sequencing › RNASeq
Software › AssayDomain › CopyNumberVariation
Software › Technology › Microarray
Software
Software › AssayDomain › DNAMethylation
Software › BiologicalQuestion › DifferentialMethylation
Software › AssayDomain › SNP
Software › Technology › Sequencing › ATACSeq
Software › Technology › Microarray › MethylationArray

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