Bioconductor Topics
Browse 499 topics across software, annotation, experiment, and workflow packages.
AnnotationData(938)
ChipManufacturer(404)
ChipName(197)
CustomCDF(0)
Organism(672)
PackageType(655)
ExperimentData(430)
AssayDomainData(107)
DiseaseModel(97)
OrganismData(165)
PackageTypeData(120)
RepositoryData(98)
SpecimenSource(126)
TechnologyData(316)
MicroarrayData(132)
SequencingData(169)
Software(2,618)
AssayDomain(970)
BiologicalQuestion(1,034)
Infrastructure(615)
ResearchField(1,389)
Immunology(426)
StatisticalMethod(884)
Technology(1,611)
Microarray(399)
Sequencing(938)
WorkflowStep(1,321)
Alignment(109)
Visualization(614)
ShinyApps
41 packages (topic tree: 40)
| Package | Status |
|---|---|
BiocHubsShinyBioc View AnnotationHub and ExperimentHub Resources Interactively | current |
View Bioconductor Package Maintainer Information Interactively | current |
CRISPRballBioc Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering | current |
ChromSCapeBioc Analysis of single-cell epigenomics datasets with a Shiny App | current |
CytoPipelineGUIBioc GUI's for visualization of flow cytometry data analysis pipelines | current |
Graphical Exploration of Design Matrices | current |
GNOSISBioc Genomics explorer using statistical and survival analysis in R | current |
GeDiBioc Defining and visualizing the distances between different genesets | current |
GeneTonicBioc Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis | current |
MSstatsShinyBioc MSstats GUI for Statistical Anaylsis of Proteomics Experiments | current |
MatrixQCvisBioc Shiny-based interactive data-quality exploration for omics data | current |
MetCircBioc Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data | current |
RFLOMICSBioc Interactive web application for Omics-data analysis | current |
SmartPhosBioc A phosphoproteomics data analysis package with an interactive ShinyApp | current |
TSARBioc Thermal Shift Analysis in R | current |
bettrBioc A Better Way To Explore What Is Best | current |
carnationBioc Interactive Exploration & Management of RNA-Seq Analyses | current |
clevRvisBioc Visualization Techniques for Clonal Evolution | current |
flowcatchRBioc Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells | current |
gDRBioc Umbrella package for R packages in the gDR suite | current |
gDRcoreBioc Processing functions and interface to process and analyze drug dose-response data | current |
geyserBioc Gene Expression displaYer of SummarizedExperiment in R | current |
goateaBioc Interactive Exploration of GSEA by the GOAT Method | current |
iSEEBioc Interactive SummarizedExperiment Explorer | current |
iSEEfierBioc Streamlining the creation of initial states for starting an iSEE instance | current |
iSEEhubBioc iSEE for the Bioconductor ExperimentHub | current |
iSEEpathwaysBioc iSEE extension for panels related to pathway analysis | current |
iSEEtreeBioc Interactive visualisation for microbiome data | current |
idealBioc Interactive Differential Expression AnaLysis | current |
igvShinyBioc igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data) | current |
imageTCGABioc TCGA Diagnostic Image Database Explorer | current |
miaDashBioc Dashboard for the interactive analysis and exploration of microbiome data | current |
omXploreBioc Vizualization tools for 'omics' datasets with R | current |
pcaExplorerBioc Interactive Visualization of RNA-seq Data Using a Principal Components Approach | current |
rawDiagBioc Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful | current |
scafariBioc Analysis of scDNA-seq data | current |
scanMiRAppBioc scanMiR shiny application | current |
shiny.goslingBioc A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny | current |
shinyDSPBioc A Shiny App For Visualizing Nanostring GeoMx DSP Data | current |
squallmsBioc Speedy quality assurance via lasso labeling for LC-MS data | current |
systemPipeShinyBioc systemPipeShiny: An Interactive Framework for Workflow Management and Visualization | current |