Skip to content

Bioconductor Topics

Browse 499 topics across software, annotation, experiment, and workflow packages.

Back to packages
Showing tree for 3.23
AnnotationData(938)
ChipManufacturer(404)
AffymetrixChip(342)
AgilentChip(17)
ClonetechChip(0)
CodelinkChip(12)
GEChip(0)
INDACChip(1)
IlluminaChip(29)
QiagenChip(1)
RNG_MRCChip(2)
RocheChip(0)
UniversityHealthNetwork(0)
ChipName(197)
HuO22(1)
JazaerimetaData(0)
Mu15v1(1)
Mu22v3(1)
Norway981(1)
OperonHumanV3(1)
PartheenMetaData(1)
Roberts2005Annotation(1)
SHDZ(1)
adme16cod(1)
ag(3)
ath1121501(4)
celegans(3)
drosgenome1(3)
drosophila2(3)
h10kcod(1)
h20kcod(1)
hcg110(3)
hcgi12k(0)
hcgi8k(0)
hgfocus(3)
hgu133a(4)
hgu133a2(4)
hgu133b(3)
hgu133plus2(4)
hgu95a(3)
hgu95av2(4)
hgu95b(3)
hgu95c(3)
hgu95d(3)
hgu95e(3)
hguatlas13k(1)
hgug4100a(1)
hgug4101a(1)
hgug4110b(1)
hgug4111a(1)
hgug4112a(1)
hguqiagenv3(1)
hi16cod(1)
hs25kresogen(1)
hu35ksuba(3)
hu35ksubb(3)
hu35ksubc(3)
hu35ksubd(3)
hu6800(3)
hwgcod(1)
illuminaHumanv1(1)
illuminaHumanv2(1)
illuminaMousev1(1)
illuminaMousev1p1(1)
illuminaRatv1(1)
indac(1)
lumiHumanV1(0)
lumiHumanV2(0)
lumiMouseV1(0)
lumiRatV1(0)
m10kcod(1)
m20kcod(1)
mgu74a(3)
mgu74av2(3)
mgu74b(3)
mgu74bv2(3)
mgu74c(3)
mgu74cv2(3)
mguatlas5k(1)
mgug4121a(1)
mgug4122a(1)
mi16cod(1)
mm24kresogen(1)
moe430a(3)
moe430b(3)
mouse4302(4)
mouse430a2(4)
mpedbarray(1)
mu11ksuba(3)
mu11ksubb(3)
mu19ksuba(2)
mu19ksubb(2)
mu19ksubc(2)
mwgcod(1)
pedbarrayv10(1)
pedbarrayv9(1)
r10kcod(1)
rae230a(3)
rae230b(3)
rat2302(4)
rgu34a(3)
rgu34b(3)
rgu34c(3)
rgug4130a(1)
ri16cod(1)
rnu34(3)
rtu34(3)
rwgcod(1)
u133x3p(3)
xenopuslaevis(2)
yeast2(3)
ygs98(4)
zebrafish(3)
CustomArray(2)
CustomCDF(0)
GACustomCDF(0)
MBNICustomCDF(0)
CustomDBSchema(10)
GeneCardsCustomSchema(0)
FunctionalAnnotation(30)
Organism(672)
Anopheles_gambiae(4)
Apis_mellifera(4)
Arabidopsis_lyrata(0)
Arabidopsis_thaliana(15)
Asparagus_officinalis(1)
Bacillus_subtilis(2)
Bos_taurus(16)
Caenorhabditis_elegans(12)
Callithrix_jacchus(2)
Canis_familiaris(16)
Chlamydomonas_reinhardtii(1)
Cicer_arietinum(1)
Ciona_intestinalis(0)
Danio_rerio(15)
Drosophila_melanogaster(17)
Drosophila_virilis(1)
Eremothecium_gossypii(0)
Escherichia_coli(12)
Gallus_gallus(14)
Gasterosteus_aculeatus(2)
Glycine_max(1)
Homo_sapiens(259)
Hordeum_vulgare(2)
Kluyveromyces_lactis(0)
Macaca_fascicularis(2)
Macaca_mulatta(12)
Magnaporthe_grisea(0)
Medicago_truncatula(0)
Monodelphis_domestica(1)
Mus_musculus(117)
Neurospora_crassa(0)
Oncorhynchus_mykiss(0)
Oryza_sativa(1)
Pan_paniscus(2)
Pan_troglodytes(11)
Plasmodium_falciparum(4)
Pseudomonas_aeruginosa(2)
Rattus_norvegicus(78)
Saccharomyces_cerevisiae(18)
Saccharum_officinarum(2)
Salmo_salar(0)
Schizosaccharomyces_pombe(0)
Staphylococcus_aureus(2)
Sus_scrofa(10)
Taeniopygia_guttata(3)
Toxoplasma_gondii(1)
Triticum_aestivum(0)
Vitis_vinifera(5)
Xenopus_laevis(3)
Xenopus_tropicalis(1)
Zea_mays(2)
PackageType(655)
AnnotationHub(43)
BSgenome(111)
ChipDb(176)
EuPathDB(1)
FRMA(12)
InparanoidDb(0)
MeSHDb(2)
OrgDb(21)
OrganismDb(3)
PolyPhen(0)
SIFT(0)
SNPlocs(6)
TxDb(50)
XtraSNPlocs(2)
cdf(118)
db0(19)
probe(98)
SequenceAnnotation(5)
GenomicSequence(5)
ExperimentData(430)
AssayDomainData(107)
CopyNumberVariationData(4)
CpGIslandData(2)
ExpressionData(89)
SNPData(14)
DiseaseModel(97)
COPDData(1)
CancerData(94)
BreastCancerData(18)
ColonCancerData(8)
KidneyCancerData(3)
LeukemiaCancerData(8)
LungCancerData(8)
OvarianCancerData(3)
ProstateCancerData(7)
HIVData(1)
OrganismData(165)
Anopheles_gambiae_Data(0)
Apis_mellifera_Data(0)
Arabidopsis_lyrata_Data(0)
Arabidopsis_thaliana_Data(6)
Bacillus_subtilis_Data(2)
Bos_taurus_Data(0)
Caenorhabditis_elegans_Data(2)
Callithrix_jacchus_Data(0)
Canis_familiaris_Data(0)
Ciona_intestinalis_Data(0)
Danio_rerio_Data(4)
Drosophila_melanogaster_Data(8)
Drosophila_virilis_Data(0)
Eremothecium_gossypii_Data(0)
Escherichia_coli_Data(4)
Gallus_gallus_Data(0)
Gasterosteus_aculeatus_Data(0)
Glycine_max_Data(0)
Homo_sapiens_Data(123)
Hordeum_vulgare_Data(0)
Kluyveromyces_lactis_Data(0)
Macaca_mulatta_Data(0)
Magnaporthe_grisea_Data(0)
Medicago_truncatul_Data(0)
Monodelphis_domestica_Data(0)
Mus_musculus_Data(31)
Neurospora_crassa_Data(0)
Oncorhynchus_mykiss_Data(0)
Oryza_sativa_Data(0)
Pan_paniscus_Data(0)
Pan_troglodytes_Data(2)
Plasmodium_falciparum_Data(0)
Pseudomonas_aeruginosa_Data(2)
Rattus_norvegicus_Data(6)
Saccharomyces_cerevisiae_Data(12)
Saccharum_officinarum_Data(0)
Schizosaccharomyces_pombe_Data(0)
Staphylococcus_aureus_Data(2)
Sus_scrofa_Data(0)
Taeniopygia_guttata_Data(0)
Triticum_aestivum_Data(0)
Vitis_vinifera_Data(0)
Xenopus_laevis_Data(0)
Xenopus_tropicalis_Data(0)
Zea_mays_Data(0)
PackageTypeData(120)
ExperimentHub(115)
ImmunoOncologyData(5)
RepositoryData(98)
ArrayExpress(14)
ENCODE(7)
GEO(65)
HapMap(10)
NCI(9)
PathwayInteractionDatabase(2)
Project1000genomes(3)
ReproducibleResearch(38)
SpecimenSource(126)
CellCulture(13)
Genome(69)
Germline(0)
Proteome(12)
Somatic(2)
StemCell(8)
Tissue(47)
TechnologyData(316)
CGHData(4)
FlowCytometryData(5)
HighThroughputImagingData(4)
MassSpectrometryData(26)
ImagingMassSpectrometryData(1)
MicroarrayData(132)
ChipOnChipData(11)
GenotypingArrayData(0)
MethylationArrayData(24)
MicroRNAArrayData(0)
MultiChannelData(1)
OneChannelData(3)
ProprietaryPlatformsData(0)
ReversePhaseProteinArrayData(0)
TissueMicroarrayData(17)
TwoChannelData(5)
mRNAArrayData(0)
MicrotitrePlateAssayData(1)
SAGEData(1)
SequencingData(169)
ChIPSeqData(17)
DNASeqData(9)
ExomeSeqData(0)
MethylSeqData(2)
MicrobiomeData(12)
RIPSeqData(0)
RNASeqData(79)
SangerSeqData(0)
SingleCellData(41)
SmallRNAData(1)
SpatialData(13)
miRNAData(7)
qPCRData(4)
Software(2,618)
AssayDomain(970)
CellBasedAssays(67)
ChIPchip(6)
CopyNumberVariation(66)
CpGIsland(12)
DNAMethylation(121)
ExonArray(12)
GeneExpression(643)
GeneticVariability(41)
SNP(90)
Transcription(186)
aCGH(9)
BiologicalQuestion(1,034)
AlternativeSplicing(51)
Coverage(165)
DNA3DStructure(13)
DemethylateRegionDetection(0)
DenovoAssembler(0)
DifferentialDNA3DStructure(0)
DifferentialExpression(400)
DifferentialMethylation(63)
DifferentialPeakCalling(16)
DifferentialSplicing(38)
DriverMutation(2)
FunctionalPrediction(36)
GeneFusionDetection(2)
GenePrediction(28)
GeneRegulation(119)
GeneSetEnrichment(173)
GeneSignaling(13)
GeneTarget(48)
GenomeAnnotation(55)
GenomeAssembly(13)
GenomeWideAssociation(34)
GenomicVariation(42)
GermlineMutation(1)
HistoneModification(11)
IndelDetection(2)
LinkageDisequilibrium(5)
MetagenomeAssembly(0)
MicrosatelliteDetection(0)
MotifAnnotation(26)
MotifDiscovery(15)
NetworkEnrichment(52)
NetworkInference(62)
NucleosomePositioning(10)
PeakDetection(24)
QuantitativeTrailLocus(0)
Scaffolding(0)
SequenceMatching(55)
SomaticMutation(25)
SplicedAlignment(6)
StructuralVariation(3)
TranscriptomeVariant(6)
VariantAnnotation(35)
VariantDetection(13)
Infrastructure(615)
DataImport(349)
DataRepresentation(162)
GPU(1)
GUI(68)
ResearchField(1,389)
Agroinformatics(0)
BiomedicalInformatics(87)
Biophysics(0)
CellBiology(69)
Cheminformatics(19)
ComparativeGenomics(13)
ComputationalChemistry(0)
Epigenetics(108)
Epitranscriptomics(4)
FunctionalGenomics(107)
Genetics(407)
Immunology(426)
ImmunoOncology(426)
ImmunoPrevention(0)
Immunogenetics(1)
Lipidomics(14)
MathematicalBiology(10)
Metabolomics(124)
Metagenomics(38)
Pharmacogenetics(16)
Pharmacogenomics(19)
Phylogenetics(16)
Proteomics(193)
StructuralGenomics(1)
StructuralPrediction(12)
SystemsBiology(100)
Transcriptomics(298)
ShinyApps(40)
StatisticalMethod(884)
Bayesian(91)
Classification(188)
Clustering(296)
DecisionTree(8)
DimensionReduction(94)
FeatureExtraction(68)
GraphAndNetwork(131)
HiddenMarkovModel(16)
MultidimensionalScaling(5)
NeuralNetwork(5)
PatternLogic(3)
PrincipalComponent(59)
Regression(156)
StructuralEquationModels(1)
SupportVectorMachine(11)
Survival(47)
TimeCourse(55)
Technology(1,611)
AnnotationHubSoftware(5)
CRISPR(24)
ExperimentHubSoftware(11)
FlowCytometry(72)
MassSpectrometry(154)
ImagingMassSpectrometry(3)
Microarray(399)
ChipOnChip(12)
GenotypingArray(2)
MethylationArray(46)
MicroRNAArray(5)
MultiChannel(7)
OneChannel(67)
ProprietaryPlatforms(11)
ReversePhaseProteinArray(0)
TissueMicroarray(2)
TwoChannel(59)
mRNAMicroarray(24)
MicrotitrePlateAssay(14)
SAGE(7)
Sequencing(938)
ATACSeq(38)
ChIPSeq(94)
DNASeq(41)
DNaseSeq(9)
DenovoGenome(0)
DenovoTranscriptome(0)
ExomeSeq(7)
HiC(36)
LongRead(7)
MNaseSeq(2)
MethylSeq(35)
MicrobialStrain(1)
Microbiome(57)
PooledScreens(6)
RIPSeq(5)
RNASeq(422)
RiboSeq(11)
SangerSeq(3)
SmallRNA(4)
TargetedResequencing(6)
WholeGenome(40)
miRNA(17)
SingleCell(346)
Spatial(87)
ddPCR(5)
qPCR(13)
WorkflowManagement(1)
WorkflowStep(1,321)
Alignment(109)
MultipleSequenceAlignment(19)
Annotation(152)
BatchEffect(76)
ExperimentalDesign(34)
GenomeBrowsers(2)
MultipleComparison(184)
Normalization(188)
Pathways(207)
BioCarta(5)
GO(76)
KEGG(55)
NCINatureCurated(0)
Reactome(22)
Preprocessing(276)
QualityControl(245)
ReportWriting(39)
Visualization(614)
Network(167)
Workflow(37)
AnnotationWorkflow(4)
BasicWorkflow(5)
DifferentialSplicingWorkflow(0)
EpigeneticsWorkflow(6)
GeneExpressionWorkflow(13)
GenomicVariantsWorkflow(0)
ImmunoOncologyWorkflow(20)
ProteomicsWorkflow(1)
ResourceQueryingWorkflow(2)
SingleCellWorkflow(10)
SpatialWorkflow(1)

cdf

118 packages

Open in full browser
PackageStatus
HspecBioc

Hspec

current
agcdfBioc

agcdf

current
ath1121501cdfBioc

ath1121501cdf

current
barley1cdfBioc

barley1cdf

current
bovinecdfBioc

bovinecdf

current
bsubtiliscdfBioc

bsubtiliscdf

current
canine2cdfBioc

canine2cdf

current
caninecdfBioc

caninecdf

current
celeganscdfBioc

celeganscdf

current
chickencdfBioc

chickencdf

current
citruscdfBioc

citruscdf

current
cottoncdfBioc

cottoncdf

current
cyp450cdfBioc

cyp450cdf

current
drosgenome1cdfBioc

drosgenome1cdf

current
drosophila2cdfBioc

drosophila2cdf

current
ecoli2cdfBioc

ecoli2cdf

current
ecoliasv2cdfBioc

ecoliasv2cdf

current
ecolicdfBioc

ecolicdf

current
gp53cdfBioc

gp53cdf

current
hcg110cdfBioc

hcg110cdf

current
hgfocuscdfBioc

hgfocuscdf

current
hgu133a2cdfBioc

hgu133a2cdf

current
hgu133acdfBioc

hgu133acdf

current
hgu133atagcdfBioc

hgu133atagcdf

current
hgu133bcdfBioc

hgu133bcdf

current
hgu133plus2cdfBioc

hgu133plus2cdf

current
hgu219cdfBioc

hgu219cdf

current
hgu95acdfBioc

hgu95acdf

current
hgu95av2cdfBioc

hgu95av2cdf

current
hgu95bcdfBioc

hgu95bcdf

current
hgu95ccdfBioc

hgu95ccdf

current
hgu95dcdfBioc

hgu95dcdf

current
hgu95ecdfBioc

hgu95ecdf

current
hivprtplus2cdfBioc

hivprtplus2cdf

current
hspeccdfBioc

hspeccdf

current
hthgu133acdfBioc

hthgu133acdf

current
hthgu133bcdfBioc

hthgu133bcdf

current
hthgu133pluspmcdfBioc

hthgu133pluspmcdf

current
htmg430acdfBioc

htmg430acdf

current
htmg430bcdfBioc

htmg430bcdf

current
htmg430pmcdfBioc

htmg430pmcdf

current
htrat230pmcdfBioc

htrat230pmcdf

current
htratfocuscdfBioc

htratfocuscdf

current
hu35ksubacdfBioc

hu35ksubacdf

current
hu35ksubbcdfBioc

hu35ksubbcdf

current
hu35ksubccdfBioc

hu35ksubccdf

current
hu35ksubdcdfBioc

hu35ksubdcdf

current
hu6800cdfBioc

hu6800cdf

current
hu6800subacdfBioc

hu6800subacdf

current
hu6800subbcdfBioc

hu6800subbcdf

current