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Release: Showing tree for 3.23

AnnotationData(938)

ChipManufacturer(404)

AffymetrixChip(342)

AgilentChip(17)

ClonetechChip(0)

CodelinkChip(12)

IlluminaChip(29)

UniversityHealthNetwork(0)

JazaerimetaData(0)

OperonHumanV3(1)

PartheenMetaData(1)

Roberts2005Annotation(1)

ag(3)

hs25kresogen(1)

illuminaHumanv1(1)

illuminaHumanv2(1)

illuminaMousev1(1)

illuminaMousev1p1(1)

illuminaRatv1(1)

mm24kresogen(1)

pedbarrayv10(1)

xenopuslaevis(2)

MBNICustomCDF(0)

CustomDBSchema(10)

GeneCardsCustomSchema(0)

FunctionalAnnotation(30)

Anopheles_gambiae(4)

Apis_mellifera(4)

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AnnotationHub(43)

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cdf(118)

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Anopheles_gambiae_Data(0)

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Drosophila_melanogaster_Data(8)

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Eremothecium_gossypii_Data(0)

Escherichia_coli_Data(4)

Gallus_gallus_Data(0)

Gasterosteus_aculeatus_Data(0)

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Homo_sapiens_Data(123)

Hordeum_vulgare_Data(0)

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Macaca_mulatta_Data(0)

Magnaporthe_grisea_Data(0)

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Mus_musculus_Data(31)

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Oncorhynchus_mykiss_Data(0)

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Pan_paniscus_Data(0)

Pan_troglodytes_Data(2)

Plasmodium_falciparum_Data(0)

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Schizosaccharomyces_pombe_Data(0)

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Software(2,618)

AssayDomain(970)

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CopyNumberVariation(66)

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GeneExpression(643)

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NetworkInference(62)

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PeakDetection(24)

QuantitativeTrailLocus(0)

SequenceMatching(55)

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SplicedAlignment(6)

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GPU(1)

GUI(68)

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Proteomics(193)

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StructuralPrediction(12)

SystemsBiology(100)

Transcriptomics(298)

StatisticalMethod(884)

Classification(188)

Clustering(296)

DecisionTree(8)

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FeatureExtraction(68)

GraphAndNetwork(131)

HiddenMarkovModel(16)

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NeuralNetwork(5)

PatternLogic(3)

PrincipalComponent(59)

Regression(156)

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SupportVectorMachine(11)

Technology(1,611)

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ExperimentHubSoftware(11)

FlowCytometry(72)

MassSpectrometry(154)

ImagingMassSpectrometry(3)

Microarray(399)

GenotypingArray(2)

MethylationArray(46)

MicroRNAArray(5)

MultiChannel(7)

ProprietaryPlatforms(11)

ReversePhaseProteinArray(0)

TissueMicroarray(2)

mRNAMicroarray(24)

MicrotitrePlateAssay(14)

Sequencing(938)

DenovoGenome(0)

DenovoTranscriptome(0)

HiC(36)

MicrobialStrain(1)

PooledScreens(6)

TargetedResequencing(6)

WholeGenome(40)

SingleCell(346)

qPCR(13)

WorkflowManagement(1)

WorkflowStep(1,321)

MultipleSequenceAlignment(19)

Annotation(152)

BatchEffect(76)

ExperimentalDesign(34)

GenomeBrowsers(2)

MultipleComparison(184)

Normalization(188)

GO(76)

KEGG(55)

NCINatureCurated(0)

Preprocessing(276)

QualityControl(245)

ReportWriting(39)

Visualization(614)

AnnotationWorkflow(4)

BasicWorkflow(5)

DifferentialSplicingWorkflow(0)

EpigeneticsWorkflow(6)

GeneExpressionWorkflow(13)

GenomicVariantsWorkflow(0)

ImmunoOncologyWorkflow(20)

ProteomicsWorkflow(1)

ResourceQueryingWorkflow(2)

SingleCellWorkflow(10)

SpatialWorkflow(1)

DecisionTree

8 packages

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Package	Category	Version	Status
CMABioc Synthesis of microarray-based classification	software	1.70.0	current
DEGraphBioc Two-sample tests on a graph	software	1.64.0	current
GENIE3Bioc GEne Network Inference with Ensemble of trees	software	1.34.0	current
POMABioc Tools for Omics Data Analysis	software	1.22.0	current
PigengeneBioc Infers biological signatures from gene expression data	software	1.38.0	current
TargetSearchBioc A package for the analysis of GC-MS metabolite profiling data	software	2.14.0	current
ggtreeDendroBioc Drawing 'dendrogram' using 'ggtree'	software	1.14.0	current
mistyRBioc Multiview Intercellular SpaTial modeling framework	software	1.20.0	current