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POMA

Bioc current

Tools for Omics Data Analysis

v1.22.0 · software · GPL-3
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

The POMA package offers a comprehensive toolkit designed for omics data analysis, streamlining the process from initial visualization to final statistical analysis. Its primary goal is to simplify and unify the various steps involved in omics data processing, making it more accessible and manageable within a single, intuitive R package. Emphasizing on reproducibility and user-friendliness, POMA leverages the standardized SummarizedExperiment class from Bioconductor, ensuring seamless integration and compatibility with a wide array of Bioconductor tools. This approach guarantees maximum flexibility and replicability, making POMA an essential asset for researchers handling omics datasets. See https://github.com/pcastellanoescuder/POMAShiny. Paper: Castellano-Escuder et al. (2021) <doi:10.1371/journal.pcbi.1009148> for more details.

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Topics

Software › WorkflowStep › BatchEffect
Software › StatisticalMethod › Classification
Software › StatisticalMethod › Clustering
Software › StatisticalMethod › DecisionTree
Software › StatisticalMethod › DimensionReduction
Software › StatisticalMethod › MultidimensionalScaling
Software › WorkflowStep › Normalization
Software › WorkflowStep › Preprocessing
Software › StatisticalMethod › PrincipalComponent
Software › StatisticalMethod › Regression
Software › Technology › Sequencing › RNASeq
Software
Software › StatisticalMethod
Software › WorkflowStep › Visualization

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