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fgsea

Bioc current

Fast Gene Set Enrichment Analysis

v1.38.0 · software · MIT + file LICENCE
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Release Lineage

Entered 3.4 · Oct 18, 2016

Current · Requires R 4.6

1.0 In 20 of 49 releases 3.23

Description

The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.

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Topics

Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression
Software › BiologicalQuestion › GeneSetEnrichment
Software › WorkflowStep › Pathways

Depended on by (75)

Bioconductor (57)

BioNAR CelliD CEMiTool Cepo clustifyr CoGAPS cTRAP decoupleR DeepTarget escape EventPointer fobitools gatom gCrisprTools gsean iSEEpathways lipidr markeR mCSEA mdp metapone MIRit Moonlight2R MPAC multiGSEA NanoTube nipalsMCIA omicsViewer pairedGSEA pathlinkR +27 more

CRAN (18)

BioUtils DTSEA cinaR mulea scITD GeneNMF RCPA Signac craftgrn easyLSEA easybio enrichit futurize genekitr ggpicrust2 goat grandR rliger

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