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nipalsMCIA

Bioc current

Multiple Co-Inertia Analysis via the NIPALS Method

v1.10.0 · software · GPL-3
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Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

Computes Multiple Co-Inertia Analysis (MCIA), a dimensionality reduction (jDR) algorithm, for a multi-block dataset using a modification to the Nonlinear Iterative Partial Least Squares method (NIPALS) proposed in (Hanafi et. al, 2010). Allows multiple options for row- and table-level preprocessing, and speeds up computation of variance explained. Vignettes detail application to bulk- and single cell- multi-omics studies.

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Topics

Software
Software › StatisticalMethod › Clustering
Software › StatisticalMethod › Classification
Software › WorkflowStep › MultipleComparison
Software › WorkflowStep › Normalization
Software › WorkflowStep › Preprocessing
Software › Technology › SingleCell

Depended on by (1)

Bioconductor (1)

tidyexposomics

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