Bioconductor Topics

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

Chimp and human brain data package

Supplementary data package for Dona et al. (2013) containing example images and tables

EpipwR.data: Reference data for EpipwR

CAGE data from FANTOM3 and FANTOM4 projects

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

Placental cell DNA methylation data from GEO accession GSE159526

Data employed in the vignette of the GSVA package

HiBED

M3Drop Example Data

expression and copy number data on clear cell renal carcinoma samples

Example SpatialFeatureExperiment datasets

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Experiment data for the TENET package

Timer Quantification

A collection of trans-omics datasets across various biological systems

EBI/PSB cross-hybridisation study package

Affymetrix Data for Demonstration Purpose

Normal colon and cancer preprocessed affy data for antiProfile building.

ExperimentHub data for the cfTools package

exprSet for Alon et al. (1999) colon cancer data

Curated breast cancer gene expression data with survival and treatment information

Cancer Dependency Map Data Package

Datasets for R Package dominatR

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Illumina DASL example microarray data

Furrow Segmentation

Access to SRT and snRNA-seq data from spatial_HPC project

Collection of publicly available imaging mass cytometry (IMC) datasets

Leukemia's microarray gene expression data (expressionSet).

Barnes Benchmark Illumina Tissues Titration Data

Data for methylclock package

Normalized gene expression dataset published by Wollbold et al. [2009] (WOLLBOLD).

A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata

Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

Data for the spqn package

Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)

TWGBS and RNA-seq data from tissue T regulatory cells from mice