spatialLIBD

Bioc current

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

v1.24.0 · experiment · Artistic-2.0

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Release Lineage

Entered 3.11 · Apr 28, 2020

Current · Requires R 4.6

1.0 In 13 of 49 releases 3.23

Description

Inspect interactively the spatially-resolved transcriptomics data from the 10x Genomics Visium platform as well as data from the Maynard, Collado-Torres et al, Nature Neuroscience, 2021 project analyzed by Lieber Institute for Brain Development (LIBD) researchers and collaborators.

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Topics

ExperimentData › OrganismData › Homo_sapiens_Data

ExperimentData › PackageTypeData › ExperimentHub

ExperimentData › TechnologyData › SequencingData

ExperimentData › TechnologyData › SequencingData › SingleCellData

ExperimentData › AssayDomainData › ExpressionData

ExperimentData › SpecimenSource › Tissue

ExperimentData › PackageTypeData

ExperimentData › TechnologyData › SequencingData › SpatialData

Depended on by (7)

Bioconductor (7)

Banksy BatchSVG BayesSpace DeconvoBuddies DESpace visiumStitched OSTA

People

Leonardo Collado-Torres author maintainer
Nicholas Eagles contributor
Louise Huuki-Myers contributor
Andrew E. Jaffe contributor
Kristen R. Maynard contributor
Brenda Pardo contributor
Abby Spangler contributor
Jesús Vélez Santiago contributor
Lukas M. Weber contributor