Bioconductor Packages

R-side access to BioPlex protein-protein interaction data

Pre-processed data for use with the CellMapper package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Data for the EpiMix package

Download datasets from EMBL-EBI Expression Atlas

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

GEO accession data GSE103322 as a SingleCellExperiment

Data employed in the vignette of the GSVA package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

Data for the Harman package

Collection of Bulk RNA-Seq Experiments With Many Replicates

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

LINCS Knock-Out Data Package

Marker gene information for LRcell R Bioconductor package

M3Drop Example Data

Collection of public MERFISH datasets

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Data for NxtIRF

Supporting data for package OMICsPCA

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Companion data package for the ReactomeGSA package

Example SpatialFeatureExperiment datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Experiment data for the TENET package

Single cell dataset from 10x in BUS format

Data from the 10X 1.3 Million Brain Cell Study

PBMC data from 10X Genomics

Visium spatial gene expression data by 10X Genomics

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

Experimental dataset from the rat BodyMap project

Data for Combination Connectivity Mapping (ccmap) Package

Index of Reference Cell Type Datasets

External data sets for clustifyr in ExperimentHub

Bladder Cancer Gene Expression Analysis

Curated breast cancer gene expression data with survival and treatment information