Bioconductor Packages

Test Files for Single-Cell Droplet Utilities

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

GEO accession data GSE103322 as a SingleCellExperiment

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

Marker gene information for LRcell R Bioconductor package

Collection of public MERFISH datasets

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Example SpatialFeatureExperiment datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Integrating Multi-modal Single Cell Experiment datasets

Collection of spatial omics datasets

Single cell dataset from 10x in BUS format

Data from the 10X 1.3 Million Brain Cell Study

PBMC data from 10X Genomics

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

10x And SmartSeq2 Data From The Tabula Muris Consortium

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

Strand-seq data for demonstration purposes

Processed scRNA data for celaref Vignette - cell labelling by reference

External data sets for clustifyr in ExperimentHub

The ewceData package provides reference data required for ewce

Collection of publicly available imaging mass cytometry (IMC) datasets

Multi-sample multi-group spatially resolved transcriptomic data

Multi-sample multi-group scRNA-seq data

A collection of datasets for use with raer package

A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata

Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets

Collection of Public Single-Cell RNA-Seq Datasets

The package contains examples of single cell data used in vignettes and examples of the scTHI package; data contain both tumor cells and immune cells from public dataset of glioma

Data Package for SingleCellAlleleExperiment

Single-Cell Proteomics Data Package

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data