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SpatialExperiment

Bioc current

S4 Class for Spatially Resolved -omics Data

v1.22.0 · software · GPL-3
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

Defines an S4 class for storing data from spatial -omics experiments. The class extends SingleCellExperiment to support storage and retrieval of additional information from spot-based and molecule-based platforms, including spatial coordinates, images, and image metadata. A specialized constructor function is included for data from the 10x Genomics Visium platform.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure › DataRepresentation
Software › Infrastructure › DataImport
Software › Infrastructure
Software › ResearchField › Immunology › ImmunoOncology
Software › AssayDomain › GeneExpression
Software › ResearchField › Transcriptomics
Software › Technology › SingleCell
Software › Technology › Spatial

Depended on by (90)

Bioconductor (88)

alabaster.spatial Banksy Battlefield BulkSignalR CARDspa CatsCradle clustSIGNAL concordexR CTSV cytomapper DenoIST DESpace escheR ExperimentSubset FLAMES GeomxTools ggsc ggspavis GSVA HistoImagePlot hoodscanR imageFeatureTCGA imageTCGAutils imcRtools jazzPanda lisaClust MoleculeExperiment nnSVG poem scider +58 more

CRAN (2)

blisa SVG

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