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BulkSignalR

Bioc current

Infer Ligand-Receptor Interactions from bulk expression (transcriptomics/proteomics) data, or spatial transcriptomics

v1.4.0 · software · CeCILL | file LICENSE
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Release Lineage

Entered 3.21 · Apr 16, 2025

Current · Requires R 4.6

1.0 In 3 of 49 releases 3.23

Description

Inference of ligand-receptor (LR) interactions from bulk expression (transcriptomics/proteomics) data, or spatial transcriptomics. BulkSignalR bases its inferences on the LRdb database included in our other package, SingleCellSignalR available from Bioconductor. It relies on a statistical model that is specific to bulk data sets. Different visualization and data summary functions are proposed to help navigating prediction results.

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Topics

Software › WorkflowStep › Visualization › Network
Software › Technology › Sequencing › RNASeq
Software
Software › ResearchField › Proteomics
Software › ResearchField › Transcriptomics
Software › BiologicalQuestion › NetworkInference
Software › Technology › Spatial

Depended on by (1)

Bioconductor (1)

SingleCellSignalR

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