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Browse 499 topics across software, annotation, experiment, and workflow packages.

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Release: Showing tree for 3.23

AnnotationData(938)

ChipManufacturer(404)

AffymetrixChip(342)

AgilentChip(17)

ClonetechChip(0)

CodelinkChip(12)

IlluminaChip(29)

UniversityHealthNetwork(0)

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OperonHumanV3(1)

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ag(3)

hs25kresogen(1)

illuminaHumanv1(1)

illuminaHumanv2(1)

illuminaMousev1(1)

illuminaMousev1p1(1)

illuminaRatv1(1)

mm24kresogen(1)

pedbarrayv10(1)

xenopuslaevis(2)

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Homo_sapiens_Data(123)

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Mus_musculus_Data(31)

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Software(2,618)

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Transcriptomics(298)

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PrincipalComponent(59)

Regression(156)

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Technology(1,611)

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FlowCytometry(72)

MassSpectrometry(154)

ImagingMassSpectrometry(3)

Microarray(399)

GenotypingArray(2)

MethylationArray(46)

MicroRNAArray(5)

MultiChannel(7)

ProprietaryPlatforms(11)

ReversePhaseProteinArray(0)

TissueMicroarray(2)

mRNAMicroarray(24)

MicrotitrePlateAssay(14)

Sequencing(938)

DenovoGenome(0)

DenovoTranscriptome(0)

HiC(36)

MicrobialStrain(1)

PooledScreens(6)

TargetedResequencing(6)

WholeGenome(40)

SingleCell(346)

qPCR(13)

WorkflowManagement(1)

WorkflowStep(1,321)

MultipleSequenceAlignment(19)

Annotation(152)

BatchEffect(76)

ExperimentalDesign(34)

GenomeBrowsers(2)

MultipleComparison(184)

Normalization(188)

GO(76)

KEGG(55)

NCINatureCurated(0)

Preprocessing(276)

QualityControl(245)

ReportWriting(39)

Visualization(614)

AnnotationWorkflow(4)

BasicWorkflow(5)

DifferentialSplicingWorkflow(0)

EpigeneticsWorkflow(6)

GeneExpressionWorkflow(13)

GenomicVariantsWorkflow(0)

ImmunoOncologyWorkflow(20)

ProteomicsWorkflow(1)

ResourceQueryingWorkflow(2)

SingleCellWorkflow(10)

SpatialWorkflow(1)

DNA3DStructure

12 packages (topic tree: 13)

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Package	Category	Version	Status
DNAshapeRBioc High-throughput prediction of DNA shape features	software	1.40.0	current
FitHiCBioc Confidence estimation for intra-chromosomal contact maps	software	1.38.0	current
HiCDCPlusBioc Hi-C Direct Caller Plus	software	1.20.0	current
HiCDOCBioc A/B compartment detection and differential analysis	software	1.14.0	current
HiCExperimentBioc Bioconductor class for interacting with Hi-C files in R	software	1.12.0	current
HiContactsBioc Analysing cool files in R with HiContacts	software	1.14.0	current
HiCoolBioc HiCool	software	1.12.0	current
HicAggRBioc Set of 3D genomic interaction analysis tools	software	1.8.0	current
hicVennDiagramBioc Venn Diagram for genomic interaction data	software	1.10.0	current
idr2dBioc Irreproducible Discovery Rate for Genomic Interactions Data	software	1.26.0	current
sevenCBioc Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs	software	1.32.0	current
spatzieBioc Identification of enriched motif pairs from chromatin interaction data	software	1.18.0	current