Bioconductor Topics

CytoBands for AnnotationHub

EnsDbs for AnnotationHub

A toolkit for APA analysis using RNA-seq data

Automatic Statistical Identification in Complex Spectra

Automated spectraL Processing System for NMR

The GCP R Client for the AnVIL

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Forge your own BSgenome data package

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Binding site defintion based on iCLIP data

Routines for the functional analysis of biological networks

Read and write GFF and GTF files

Programmatic Access to the Azul API

Illustration of FHIR ingestion and transformation using R

Manage Files Across Sessions

Efficient manipulation of biological strings

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Cytometry dATa anALYSis Tools

CNE Detection and Visualization

Identifies false positives of CNV calling tools by using SNV calls

Package for CTDbase data query, visualization and downstream analysis

Data companion to CTexploreR

Explores Cancer Testis Genes

Read and write mass spectrometry imaging files

Quantitative comparison of multiple ChIP-seq datasets

R interface to a subset of OpenBabel functionalities

Cheminformatics Toolkit for R

Simulation of Tumor Clonal Evolution with Realistic Sequencing Noise

An Investigation Across Different Species and Tissues

Create Copy-Number Plots using karyoploteR functionality

A GatingML Interface for Cross Platform Cytometry Data Sharing

Tools for the Differential Analysis of Proteins Abundance with R

Tools for curating, analyzing, and manipulating biological sequences

Methylation array and sequencing spatial analysis methods

Differential Network Enrichment Analysis for Biological Data

DegNorm: degradation normalization for RNA-seq data

A DownStream Chemo-Proteomics Analysis Pipeline

Utilities for Handling Single-Cell Droplet Data

Estimating Absolute Abundance from Microbial Spike-in Controls

Quality control and analysis tools for Illumina DNA methylation BeadChip

Provides access to pathogen annotation resources available on EuPathDB databases

Client to access ExperimentHub resources

Add resources to ExperimentHub

Manages subsets of data with Bioconductor Experiment objects

FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data