Bioconductor Topics

Ancestry Specific Allele Frequency Estimation

High Performance Data Integration for Large-Scale Analyses of Incomplete Omic Profiles Using Batch-Effect Reduction Trees (BERT)

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

Bioinformatics Genetic Algorithm (BioGA)

Cytometry dATa anALYSis Tools

Estimating Absolute Abundance from Microbial Spike-in Controls

Efficient Power Analysis for EWAS with Continuous or Binary Outcomes

Graphical Exploration of Design Matrices

NanoString GeoMx Tools

Multi-Omics Simulation (MOSim)

Statistical Analysis of MPRA data

Infrastructure for Mass Spectrometry Experiments

OSAT: Optimal Sample Assignment Tool

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Creating a DelayedMatrix of Regression Residuals

RnaSeqSampleSize

Transform and Filter SWATH Data for Statistical Packages

SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures

Uncertainty-aware quantitative analysis of high-throughput live cell migration data

Compare Characteristic Features of Count Data Sets

Suite of Functions for Pooled Crispr Screen QC and Analysis

A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Retrieves Condition-Specific Variants in RNA-Seq Data

An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family of methods

mobileRNA: Investigate the RNA mobilome & population-scale changes

Robust statistical inference for quantitative LC-MS proteomics

L1-regularization based methods for detection of differential splicing

Exposome exploration and outcome data analysis

Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications

Simulation of Multi-Modality Single Cell Data Guided By Gene Regulatory Networks and Cell-Cell Interactions

Seahtrue revives XF data for structured data analysis

systemPipeShiny: An Interactive Framework for Workflow Management and Visualization

Tools for data visualization

Well Plate Maker