Bioconductor Topics

Attribute-Weighted Aggregation Data

Illumina EPIC data on BeadSorted child saliva cells

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

R-side access to BioPlex protein-protein interaction data

Hub package for the precomputed data of CENTRE and example data

ChIP-seq Target Databases for TFEA.ChIP

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

DNA methylation-based machine learning models

Data Package for DMRcate

Example DNAm Data for DMRsegal

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Data for the EpiMix package

EpipwR.data: Reference data for EpipwR

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Reference data for GenomicDistributions package

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

16S rRNA Sequencing Data from the Human Microbiome Project

HiBED

HiContacts companion data package

Collection of Bulk RNA-Seq Experiments With Many Replicates

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

Marker gene information for LRcell R Bioconductor package

Test datasets for the MACSr package

Collection of public MERFISH datasets

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Collection of Public DNA Methylation Sequencing Datasets

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Experimental Data for MutSeqR Examples

Nanopore RNA-Seq Example data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data for NxtIRF

Ob/ob Mice Data on Normal and High Fat Diet

Data package for phylogenetic profile analysis using PhyloProfile tool

Programmatic access to ProteinGym datasets in R/Bioconductor

Example SpatialFeatureExperiment datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Integrating Multi-modal Single Cell Experiment datasets

Data supporting the SingleMoleculeFootprinting pkg