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Release: Showing tree for 3.23

AnnotationData(938)

ChipManufacturer(404)

AffymetrixChip(342)

AgilentChip(17)

ClonetechChip(0)

CodelinkChip(12)

IlluminaChip(29)

UniversityHealthNetwork(0)

JazaerimetaData(0)

OperonHumanV3(1)

PartheenMetaData(1)

Roberts2005Annotation(1)

ag(3)

hs25kresogen(1)

illuminaHumanv1(1)

illuminaHumanv2(1)

illuminaMousev1(1)

illuminaMousev1p1(1)

illuminaRatv1(1)

mm24kresogen(1)

pedbarrayv10(1)

xenopuslaevis(2)

MBNICustomCDF(0)

CustomDBSchema(10)

GeneCardsCustomSchema(0)

FunctionalAnnotation(30)

Anopheles_gambiae(4)

Apis_mellifera(4)

Arabidopsis_lyrata(0)

Arabidopsis_thaliana(15)

Asparagus_officinalis(1)

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Mus_musculus(117)

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Xenopus_laevis(3)

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AnnotationHub(43)

FRMA(12)

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cdf(118)

db0(19)

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Anopheles_gambiae_Data(0)

Apis_mellifera_Data(0)

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Arabidopsis_thaliana_Data(6)

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Drosophila_melanogaster_Data(8)

Drosophila_virilis_Data(0)

Eremothecium_gossypii_Data(0)

Escherichia_coli_Data(4)

Gallus_gallus_Data(0)

Gasterosteus_aculeatus_Data(0)

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Homo_sapiens_Data(123)

Hordeum_vulgare_Data(0)

Kluyveromyces_lactis_Data(0)

Macaca_mulatta_Data(0)

Magnaporthe_grisea_Data(0)

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Monodelphis_domestica_Data(0)

Mus_musculus_Data(31)

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Oncorhynchus_mykiss_Data(0)

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Plasmodium_falciparum_Data(0)

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Software(2,618)

AssayDomain(970)

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CopyNumberVariation(66)

DNAMethylation(121)

GeneExpression(643)

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SNP(90)

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NetworkInference(62)

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PeakDetection(24)

QuantitativeTrailLocus(0)

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SplicedAlignment(6)

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GPU(1)

GUI(68)

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Proteomics(193)

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SystemsBiology(100)

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StatisticalMethod(884)

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HiddenMarkovModel(16)

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PrincipalComponent(59)

Regression(156)

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ExperimentHubSoftware(11)

FlowCytometry(72)

MassSpectrometry(154)

ImagingMassSpectrometry(3)

Microarray(399)

GenotypingArray(2)

MethylationArray(46)

MicroRNAArray(5)

MultiChannel(7)

ProprietaryPlatforms(11)

ReversePhaseProteinArray(0)

TissueMicroarray(2)

mRNAMicroarray(24)

MicrotitrePlateAssay(14)

Sequencing(938)

DenovoGenome(0)

DenovoTranscriptome(0)

HiC(36)

MicrobialStrain(1)

PooledScreens(6)

TargetedResequencing(6)

WholeGenome(40)

SingleCell(346)

qPCR(13)

WorkflowManagement(1)

WorkflowStep(1,321)

MultipleSequenceAlignment(19)

Annotation(152)

BatchEffect(76)

ExperimentalDesign(34)

GenomeBrowsers(2)

MultipleComparison(184)

Normalization(188)

GO(76)

KEGG(55)

NCINatureCurated(0)

Preprocessing(276)

QualityControl(245)

ReportWriting(39)

Visualization(614)

AnnotationWorkflow(4)

BasicWorkflow(5)

DifferentialSplicingWorkflow(0)

EpigeneticsWorkflow(6)

GeneExpressionWorkflow(13)

GenomicVariantsWorkflow(0)

ImmunoOncologyWorkflow(20)

ProteomicsWorkflow(1)

ResourceQueryingWorkflow(2)

SingleCellWorkflow(10)

SpatialWorkflow(1)

BioCarta

5 packages

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Package	Category	Version	Status
BioCartaImageBioc BioCarta Pathway Images	software	1.10.0	current
UniProt.wsBioc R Interface to UniProt Web Services	software	2.52.0	current
loci2pathBioc Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs	software	1.32.0	current
multiGSEABioc Combining GSEA-based pathway enrichment with multi omics data integration	software	1.22.0	current
padmaBioc Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis	software	1.22.0	current