Skip to content

loci2path

Bioc current

Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

v1.32.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.7 · May 1, 2018

Current · Requires R 4.6

1.0 In 17 of 49 releases 3.23

Description

loci2path performs statistics-rigorous enrichment analysis of eQTLs in genomic regions of interest. Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) project and pathway collections from MSigDB.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › FunctionalGenomics
Software › ResearchField › Genetics
Software › BiologicalQuestion › GeneSetEnrichment
Software
Software › AssayDomain › GeneExpression
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Pathways › BioCarta

People

Tianlei Xu