Bioconductor Topics

R-side access to BioPlex protein-protein interaction data

Annotations for City of Hope CpG Island Analysis Pipeline

Pre-processed data for use with the CellMapper package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Data Package for DMRcate

Example DNAm Data for DMRsegal

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Data for the ELMER package

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Data for the EpiMix package

Download datasets from EMBL-EBI Expression Atlas

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

GEO accession data GSE103322 as a SingleCellExperiment

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

Data for the Harman package

Collection of Bulk RNA-Seq Experiments With Many Replicates

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

LINCS Knock-Out Data Package

Marker gene information for LRcell R Bioconductor package

M3Drop Example Data

Collection of public MERFISH datasets

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Data for NxtIRF

Supporting data for package OMICsPCA

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

An RRBS data set with 12 samples and 10,000 simulated DMRs

Companion data package for the ReactomeGSA package

Example SpatialFeatureExperiment datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Data for the TCGAbiolinksGUI package

Experiment data for the TENET package

Single cell dataset from 10x in BUS format

Data from the 10X 1.3 Million Brain Cell Study

PBMC data from 10X Genomics