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uwot

The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction

v0.2.4 · Nov 9, 2025 · GPL (>= 3)

Description

An implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018) <doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and to carry out supervised dimensionality reduction. An implementation of the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370> is also provided. This is a complete re-implementation in R (and C++, via the 'Rcpp' package): no Python installation is required. See the uwot website (<https://github.com/jlmelville/uwot>) for more documentation and examples.

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CRAN Check Status

2 NOTE
12 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is 16.6Mb
  sub-directories of 1Mb or more:
    libs  15.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 16.9Mb
  sub-directories of 1Mb or more:
    libs  15.9Mb
OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 16.6Mb
  sub-directories of 1Mb or more:
    libs  15.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 16.9Mb
  sub-directories of 1Mb or more:
    libs  15.9Mb

Reverse Dependencies (42)

Dependency Network

Dependencies Reverse dependencies Matrix FNN irlba Rcpp RcppAnnoy RSpectra BioM2 ClustAssess ExpressionCellNet HDStIM MethScope Seurat WormTensor bbknnR embed fastTopics iCellR mxnorm pandemonium rliger scDHA +27 more reverse deps uwot

Version History

new 0.2.4 Mar 9, 2026