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scDHA

Single-Cell Decomposition using Hierarchical Autoencoder

v1.2.3 · Sep 23, 2025 · GPL-3

Description

Provides a fast and accurate pipeline for single-cell analyses. The 'scDHA' software package can perform clustering, dimension reduction and visualization, classification, and time-trajectory inference on single-cell data (Tran et.al. (2021) <DOI:10.1038/s41467-021-21312-2>).

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r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    data   4.1Mb
    libs   3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   4.1Mb
    libs   2.9Mb
OK r-oldrel-windows-x86_64

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OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    data   4.1Mb
    libs   3.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  7.3Mb
  sub-directories of 1Mb or more:
    data   4.1Mb
    libs   2.9Mb

Dependency Network

Dependencies Reverse dependencies matrixStats foreach doParallel igraph Matrix uwot cluster Rcpp RcppParallel RcppAnnoy torch (>= 0.3.0) RhpcBLASctl coro scDHA

Version History

new 1.2.3 Mar 9, 2026