MiscMetabar
Miscellaneous Functions for Metabarcoding Analysis
v0.14.4
·
Sep 30, 2025
·
AGPL-3
Description
Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' R packages. It helps to build reproducible and robust bioinformatics pipelines in R. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | ERROR |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (15 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'phyloseq', 'dada2' Packages suggested but not available for checking: 'Biostrings', 'DECIPHER', 'DESeq2', 'gghalves', 'glmulti', 'mia', 'phyloseqGraphTest', 'SummarizedExperiment', 'venneuler' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-devel-linux-x86_64-debian-gcc
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r-devel-linux-x86_64-fedora-clang
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r-devel-macos-arm64
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r-devel-windows-x86_64
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r-oldrel-macos-arm64
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r-oldrel-macos-x86_64
Rd cross-references
Package unavailable to check Rd xrefs: ‘ANCOMBC’
NOTE
r-oldrel-macos-x86_64
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
OK
r-oldrel-windows-x86_64
*
ERROR
r-patched-linux-x86_64
package dependencies
Package required but not available: ‘phyloseq’ Packages suggested but not available for checking: 'gghalves', 'phyloseqGraphTest' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-release-linux-x86_64
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OK
r-release-macos-arm64
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r-release-macos-x86_64
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r-release-windows-x86_64
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Check History
ERROR 11 OK · 1 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'phyloseq', 'dada2' Packages suggested but not available for checking: 'Biostrings', 'DECIPHER', 'DESeq2', 'gghalves', 'glmulti', 'mia', 'phyloseqGraphTest', 'SummarizedExperiment', 'venneuler' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
ERROR
r-patched-linux-x86_64
package dependencies
Package required but not available: ‘phyloseq’ Packages suggested but not available for checking: 'gghalves', 'phyloseqGraphTest' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-oldrel-macos-x86_64
package dependencies
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
Dependency Network
Version History
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0.14.4
Mar 10, 2026