rliger
Linked Inference of Genomic Experimental Relationships
v2.2.1
·
Aug 26, 2025
·
GPL-3
Description
Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
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CRAN Check Status
1
ERROR
3
NOTE
10
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (15 non-OK)
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'DelayedArray', 'HDF5Array' Packages suggested but not available for checking: 'AnnotationDbi', 'DESeq2', 'org.Hs.eg.db', 'reactome.db', 'SingleCellExperiment', 'SummarizedExperiment' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK
r-devel-linux-x86_64-debian-gcc
*
OK
r-devel-linux-x86_64-fedora-clang
*
OK
r-devel-linux-x86_64-fedora-gcc
*
NOTE
r-devel-macos-arm64
compiled code
File ‘rliger/libs/rliger.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
OK
r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 11.1Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.9Mb
NOTE
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘reactome.db’
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR
r-devel-linux-x86_64-debian-clang
package dependencies
Packages required but not available: 'DelayedArray', 'HDF5Array' Packages suggested but not available for checking: 'AnnotationDbi', 'DESeq2', 'org.Hs.eg.db', 'reactome.db', 'SingleCellExperiment', 'SummarizedExperiment' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-devel-macos-arm64
compiled code
File ‘rliger/libs/rliger.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
NOTE
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘reactome.db’
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
Reverse Dependencies (1)
suggests
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Version History
new
2.2.1
Mar 9, 2026