MethScope
Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent Pattern Encoding
v1.0.1
·
Feb 26, 2026
·
MIT + file LICENSE
Description
Methods for analyzing DNA methylation data via Most Recurrent Methylation Patterns (MRMPs). Supports cell-type annotation, spatial deconvolution, unsupervised clustering, and cancer cell-of-origin inference. Includes C-backed summaries for YAME “.cg/.cm” files (overlap counts, log2 odds ratios, beta/depth aggregation), an XGBoost classifier, NNLS deconvolution, and plotting utilities. Scales to large spatial and single-cell methylomes and is robust to extreme sparsity.
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NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 8.2Mb
sub-directories of 1Mb or more:
R 2.1Mb
extdata 4.5Mb
help 1.2Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
R 2.1Mb
extdata 4.5Mb
help 1.2Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 7.1Mb
sub-directories of 1Mb or more:
R 1.1Mb
extdata 4.5Mb
help 1.2Mb
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Version History
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1.0.1
Mar 9, 2026