Description
Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
OK
r-devel-linux-x86_64-debian-clang
*
OK
r-devel-linux-x86_64-debian-gcc
*
NOTE
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Namespaces in Imports field not imported from: ‘Seurat’ ‘tibble’ ‘utils’ All declared Imports should be used.
NOTE
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Namespaces in Imports field not imported from: ‘Seurat’ ‘tibble’ ‘utils’ All declared Imports should be used.
OK
r-devel-macos-arm64
*
OK
r-devel-windows-x86_64
*
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 4.9Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
libs 4.9Mb
OK
r-oldrel-windows-x86_64
*
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Namespaces in Imports field not imported from: ‘Seurat’ ‘tibble’ ‘utils’ All declared Imports should be used.
NOTE
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Namespaces in Imports field not imported from: ‘Seurat’ ‘tibble’ ‘utils’ All declared Imports should be used.
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 4.9Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
libs 4.9Mb
Reverse Dependencies (5)
Dependency Network
Version History
new
1.0.6
Mar 9, 2026