Description
Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.
Downloads
487
Last 30 days
7519th
997
Last 90 days
997
Last year
Trend: -4.5% (30d vs prior 30d)
CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (16 non-OK)
*
*
*
*
*
*
installed package size
installed size is 11.2Mb
sub-directories of 1Mb or more:
libs 9.4Mb
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
installed package size
installed size is 11.3Mb
sub-directories of 1Mb or more:
libs 9.5Mb
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
*
*
*
*
*
Additional Issues
Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'