Bioconductor packages

Complexome Profiling Analysis package

Automated detection tool for spillover errors

Make Complex Heatmaps

Creating and Using (Chemical) Compound Annotation Databases

ConsensusClusterPlus

Create Copy-Number Plots using karyoploteR functionality

Coralysis sensitive identification of imbalanced cell types and states in single-cell data via multi-level integration

Classes and Functions to Serve as the Basis for Other 'Gx' Packages

Correlation Motif Fit

Coverage visualization package for R

An R package for colorectal cancer screening and microbiome analysis

Tools for counting and visualising mutations in a target location

Queries the Human Cell Atlas

Power analysis for CyTOF experiments

Robust prediction of clinical outcomes using cytometry data without cell gating

Conditional Differential Analysis for Flow and Mass Cytometry Experiments

Low Dimensions projection of cytometry samples

A GatingML Interface for Cross Platform Cytometry Data Sharing

Automation and visualization of flow cytometry data analysis pipelines

GUI's for visualization of flow cytometry data analysis pipelines

Finds DAMEs - Differential Allelicly MEthylated regions

Tools for the Differential Analysis of Proteins Abundance with R

Denoising Algorithm based on Relevance network Topology

Differential Composition Analysis Transformed by a Similarity matrix

Tools for curating, analyzing, and manipulating biological sequences

Differential gene expression data formats converter

Two-sample tests on a graph

Report of DEG analysis

Identify Differentially Expressed Genes from RNA-seq data

Identifies differentially expressed genes with respect to other local genes

Differential Enrichment Scan 2

Differential gene expression analysis based on the negative binomial distribution

DESpace: a framework to discover spatially variable genes and differential spatial patterns across conditions

Differential Expressed Windows Based on Negative Binomial Distribution

Inference of differential exon usage in RNA-Seq

a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.

DEsingle for detecting three types of differential expression in single-cell RNA-seq data

DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

Differential Expression Meta-Analysis

Gene Selection

A `DataFrame` (`S4Vectors`) backend for `dplyr`

Differentially Methylated Cytosines via a Bayesian Functional Approach

Differentially Methylated CpG using Hidden Markov Model

Detection of Differentially Methylated Regions

Differentially Methylated Regions Caller

Methylation array and sequencing spatial analysis methods

A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

DNA Copy Number Data Analysis

DNA Cyclizability Prediction