Bioconductor Packages

A DownStream Chemo-Proteomics Analysis Pipeline

Utilities for Handling Single-Cell Droplet Data

Estimating Absolute Abundance from Microbial Spike-in Controls

Drug versus Disease Data

Dynamic document tools

Easy and efficient ensemble gene set testing with EGSEA

Quality control and analysis tools for Illumina DNA methylation BeadChip

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Provides access to pathogen annotation resources available on EuPathDB databases

Package for the Comprehensive Analysis of Transcriptomic Data

Client to access ExperimentHub resources

Add resources to ExperimentHub

Manages subsets of data with Bioconductor Experiment objects

Download datasets from EMBL-EBI Expression Atlas

Gene Expression Normalization Workflow

Human Functional Interactions (FIs) for splineTimeR package

FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data

A Bioconductor package for accessing GA4GH API data servers

Shiny application for interacting with GA4GH-based data servers

Tools for working with gcloud and gsutil

Representing GDS files as array-like objects

GEM: fast association study for the interplay of Gene, Environment and Methylation

Downloads ENA Fastqs With GEO Accessions

A compilation of metadata from NCBI GEO

Get data from NCBI Gene Expression Omnibus (GEO)

Genomics explorer using statistical and survival analysis in R

Visualise microarray and RNAseq data using gene ontology annotations

GSCA: Gene Set Context Analysis

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data used in the examples and vignettes of the GWASTools package

Defining and visualizing the distances between different genesets

Genomic Visualizations in R

GeneRegionScan

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

Representation and manipulation of short genomic alignments

Enhanced string parsing for genomic coordinates

NIH / NCI Genomic Data Commons Access

GenomicDistributions: fast analysis of genomic intervals with Bioconductor

Query the gene models of a given organism/assembly

Distributed computing by file or by range

Representation and manipulation of genomic intervals

Infrastructure to work with genomewide position-specific scores

Representation and Manipulation of Genomic Tuples

GeoMx Digital Spatial Profiler (DSP) data analysis workflows

NanoString GeoMx Tools

Population-level Representation on scRNA-Seq data

Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)

S4 Class for Quantitative Data and Associated Networks