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GmicR

Bioc current

Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)

v1.26.0 · software · GPL-2 + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.10 · Oct 30, 2019

Current · Requires R 4.6

1.0 In 14 of 49 releases 3.23

Description

This package uses bayesian network learning to detect relationships between Gene Modules detected by WGCNA and immune cell signatures defined by xCell. It is a hypothesis generating tool.

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Topics

Software
Software › ResearchField › SystemsBiology
Software › StatisticalMethod › GraphAndNetwork
Software › WorkflowStep › Visualization › Network
Software › BiologicalQuestion › NetworkInference
Software › Infrastructure › GUI
Software › ResearchField › Immunology › ImmunoOncology
Software › AssayDomain › GeneExpression
Software › WorkflowStep › QualityControl
Software › StatisticalMethod › Bayesian
Software › StatisticalMethod › Clustering

People

Richard Virgen-Slane