Bioconductor Packages

Client to access AnnotationHub resources

An interactive Shiny dashboard for Bioconductor package maintainers

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

An Investigation Across Different Species and Tissues

GUI's for visualization of flow cytometry data analysis pipelines

Interactive Workflow for Discovering Rhythmicity in Biological Data

Client to access ExperimentHub resources

Add resources to ExperimentHub

Shiny application for interacting with GA4GH-based data servers

GEM: fast association study for the interplay of Gene, Environment and Methylation

Genomics explorer using statistical and survival analysis in R

GSCA: Gene Set Context Analysis

Defining and visualizing the distances between different genesets

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)

Graphical User Interface for IsoCorrectoR

Fast treatment of MACSQuantify FACS data

A graphical user interface for MSstatsQC package

MSstats GUI for Statistical Anaylsis of Proteomics Experiments

Shiny-based interactive data-quality exploration for omics data

Visual and interactive quality control of large Illumina DNA Methylation array data sets

An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples

Provides a GUI for DAPAR

Interactive visualization and manipulation of nested networks

Single-Cell Consensus Clustering

Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by Disease Ontology

A phosphoproteomics data analysis package with an interactive ShinyApp

interactive analysis and visualization of alternative splicing in R

Tools for Single-Cell Analysis

TVTB: The VCF Tool Box

Processing of adductomic mass spectral datasets

GUI for limma Package with Affymetrix Microarrays

A Better Way To Explore What Is Best

Interactive Multi-Omics Cancers Data Visualization and Analysis

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Interactive Exploration & Management of RNA-Seq Analyses

Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics

Exploring curated CRISPR gRNAs via Shiny

R Interface to epiviz web app

R interface to epiviz web components

Run Epiviz Interactive Genomic Data Visualization App within R

Analyze flow cytometer data to determine sample ploidy

Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells

Gene Expression displaYer of SummarizedExperiment in R

Interactive Exploration of GSEA by the GOAT Method

Interactive SummarizedExperiment Explorer

Streamlining the creation of initial states for starting an iSEE instance

iSEE extension for panels related to pathway analysis

Interactive visualisation for microbiome data

iSEE Universe