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TSCAN

Bioc current

Tools for Single-Cell Analysis

v1.50.0 · software · GPL(>=2)
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Release Lineage

Entered 3.0 · Oct 14, 2014

Current · Requires R 4.6

1.0 In 24 of 49 releases 3.23

Description

Provides methods to perform trajectory analysis based on a minimum spanning tree constructed from cluster centroids. Computes pseudotemporal cell orderings by mapping cells in each cluster (or new cells) to the closest edge in the tree. Uses linear modelling to identify differentially expressed genes along each path through the tree. Several plotting and interactive visualization functions are also implemented.

Code

Code metrics have not been computed for this package yet.

Topics

Software › AssayDomain › GeneExpression
Software › WorkflowStep › Visualization
Software › Infrastructure › GUI

Depended on by (7)

Bioconductor (6)

condiments FEAST singleCellTK ctgGEM OSCA.advanced OSCA.multisample

CRAN (1)

DIscBIO

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