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ctgGEM

Bioc removed

Generating Tree Hierarchy Visualizations from Gene Expression Data

v1.10.0 · GPL(>=2)
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Release Lineage

Entered 3.11 · Apr 28, 2020

Removed after 3.16 · Nov 2, 2022

1.0 In 6 of 49 releases 3.23

Description

Cell Tree Generator for Gene Expression Matrices (ctgGEM) streamlines the building of cell-state hierarchies from single-cell gene expression data across multiple existing tools for improved comparability and reproducibility. It supports pseudotemporal ordering algorithms and visualization tools from monocle, cellTree, TSCAN, sincell, and destiny, and provides a unified output format for integration with downstream data analysis workflows and Cytoscape.

Code

Code metrics have not been computed for this package yet.

Topics

Software › AssayDomain › GeneExpression
Software › WorkflowStep › Visualization
Software › Technology › Sequencing
Software › Technology › SingleCell
Software › StatisticalMethod › Clustering
Software › Technology › Sequencing › RNASeq
Software › ResearchField › ImmunoOncology
Software › BiologicalQuestion › DifferentialExpression
Software › WorkflowStep › MultipleComparison
Software › WorkflowStep › QualityControl
Software › Infrastructure › DataImport

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