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scPipe

Bioc current

Pipeline for single cell multi-omic data pre-processing

v2.12.0 · software · GPL (>= 2)
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Release Lineage

Entered 3.6 · Oct 31, 2017

Current · Requires R 4.6

1.0 In 18 of 49 releases 3.23

Description

A preprocessing pipeline for single cell RNA-seq/ATAC-seq data that starts from the fastq files and produces a feature count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software
Software › Technology › Sequencing
Software › Technology › Sequencing › RNASeq
Software › AssayDomain › GeneExpression
Software › Technology › SingleCell
Software › WorkflowStep › Visualization
Software › BiologicalQuestion › SequenceMatching
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › QualityControl
Software › BiologicalQuestion › GenomeAnnotation
Software › Infrastructure › DataImport

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Bioconductor (2)

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