Bioconductor Packages

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Affinity Network Fusion for Complex Patient Clustering

A toolkit for APA analysis using RNA-seq data

Association Plots

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

Automatic Statistical Identification in Complex Spectra

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

Analysis of Alternative Splicing Using RNA-Seq

Attribute-Weighted Aggregation

An R package for fast computing for adaptively weighted fisher's method

A Functional Approach To Impute Genetically Regulated Expression

Investigates Allele Specific Expression

Automated spectraL Processing System for NMR

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Run workflows implemented in Terra/AnVIL workspace

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

A Bayesian Approach for Geneset Selection

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

Correction of batch effects in DNA methylation data

Performs Bayesian GWAS analysis for non-Gaussian data using BG2

Refitting diploid region profiles using a clustering procedure

Model higher-order methylation profiles

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Computational pipeline for computing probability of modification from structure probing experiment data

Batch Effects Correction with Unknown Subtypes

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

Spatial transcriptomic clustering

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Batch Effects Quality Control Software

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology