Bioconductor Packages

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Affinity Network Fusion for Complex Patient Clustering

Association Plots

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

Analysis Tools for scATACseq Data with CoGAPS

Attribute-Weighted Aggregation

An R package for fast computing for adaptively weighted fisher's method

A Functional Approach To Impute Genetically Regulated Expression

Automated spectraL Processing System for NMR

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

geneChip Analysis Package

A Bayesian Approach for Geneset Selection

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

Meta-analysis for the metagenomic read counts data from different cohorts

BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)

Correction of batch effects in DNA methylation data

Performs Bayesian GWAS analysis for non-Gaussian data using BG2

Bayesian Hierarchical Clustering

Refitting diploid region profiles using a clustering procedure

Model higher-order methylation profiles

Computational pipeline for computing probability of modification from structure probing experiment data

Batch Effects Correction with Unknown Subtypes

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

Spatial transcriptomic clustering

Batch Effects Quality Control Software

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Biclustering Analysis and Results Exploration

Functional Similarities

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

Model-View-Controller (MVC) Classes That Use Biobase

Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions

Biological Network Analysis in R

Biological Network Reconstruction Omnibus

Routines for the functional analysis of biological networks

Biological Network Analysis

Classification for Biological Sequences

View AnnotationHub and ExperimentHub Resources Interactively

View Bioconductor Package Maintainer Information Interactively

Nearest Neighbor Detection for Bioconductor Packages