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ATACCoGAPS

Bioc removed

Analysis Tools for scATACseq Data with CoGAPS

v1.8.0 · Artistic-2.0
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Release Lineage

Entered 3.16 · Nov 2, 2022

Removed after 3.20 · Oct 30, 2024

1.0 In 5 of 49 releases 3.23

Description

Provides tools for running the CoGAPS algorithm (Fertig et al, 2010) on single-cell ATAC sequencing data and analysis of the results. Can be used to perform analyses at the level of genes, motifs, TFs, or pathways. Additionally provides tools for transfer learning and data integration with single-cell RNA sequencing data.

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Topics

Software
Software › ResearchField
Software › ResearchField › Epigenetics
Software › Technology › SingleCell
Software › AssayDomain › Transcription
Software › StatisticalMethod › Bayesian
Software › StatisticalMethod › Clustering
Software › StatisticalMethod › DimensionReduction

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