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muscat

Bioc current

Multi-sample multi-group scRNA-seq data analysis tools

v1.26.0 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.10 · Oct 30, 2019

Current · Requires R 4.6

1.0 In 14 of 49 releases 3.23

Description

`muscat` provides various methods and visualization tools for DS analysis in multi-sample, multi-group, multi-(cell-)subpopulation scRNA-seq data, including cell-level mixed models and methods based on aggregated “pseudobulk” data, as well as a flexible simulation platform that mimics both single and multi-sample scRNA-seq data.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › BiologicalQuestion › DifferentialExpression
Software › Technology › Sequencing
Software › Technology › SingleCell
Software
Software › StatisticalMethod
Software › WorkflowStep › Visualization

Depended on by (4)

Bioconductor (4)

crumblr DeeDeeExperiment dreamlet muscData

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