|
BiocPkgTools
Bioc
|
Collection of simple tools for learning about Bioconductor
Packages
|
software |
1.30.1 |
|
DifferentialRegulation
Bioc
|
Differentially regulated genes from scRNA-seq data
|
software |
2.10.0 |
|
ExploreModelMatrix
Bioc
|
Graphical Exploration of Design Matrices
|
software |
1.24.0 |
|
HDCytoData
Bioc
|
Collection of high-dimensional cytometry benchmark datasets in
Bioconductor object formats
|
experiment |
1.32.1 |
|
QuasR
Bioc
|
Quantify and Annotate Short Reads in R
|
software |
1.52.0 |
|
Rhisat2
Bioc
|
R Wrapper for HISAT2 Aligner
|
software |
1.28.0 |
|
TabulaMurisData
Bioc
|
10x And SmartSeq2 Data From The Tabula Muris Consortium
|
experiment |
1.30.0 |
|
TabulaMurisSenisData
Bioc
|
Bulk and single-cell RNA-seq data from the Tabula Muris Senis
project
|
experiment |
1.18.0 |
|
alevinQC
Bioc
|
Generate QC Reports For Alevin Output
|
software |
1.28.0 |
|
bettr
Bioc
|
A Better Way To Explore What Is Best
|
software |
1.8.0 |
|
compcodeR
Bioc
|
RNAseq data simulation, differential expression analysis and
performance comparison of differential expression methods
|
software |
1.48.0 |
|
countsimQC
Bioc
|
Compare Characteristic Features of Count Data Sets
|
software |
1.30.0 |
|
eisaR
Bioc
|
Exon-Intron Split Analysis (EISA) in R
|
software |
1.24.0 |
|
iCOBRA
Bioc
|
Comparison and Visualization of Ranking and Assignment Methods
|
software |
1.40.0 |
|
iSEE
Bioc
|
Interactive SummarizedExperiment Explorer
|
software |
2.24.0 |
|
iSEEhex
Bioc
|
iSEE extension for summarising data points in hexagonal bins
|
software |
1.14.0 |
|
iSEEid
Bioc removed
|
iSEE extension to assist in identifying sets of samples/cells
|
|
0.99.1 |
|
iSEEpathways
Bioc
|
iSEE extension for panels related to pathway analysis
|
software |
1.10.0 |
|
iSEEu
Bioc
|
iSEE Universe
|
software |
1.24.0 |
|
monaLisa
Bioc
|
Binned Motif Enrichment Analysis and Visualization
|
software |
1.18.0 |
|
muscat
Bioc
|
Multi-sample multi-group scRNA-seq data analysis tools
|
software |
1.26.0 |
|
mutscan
Bioc
|
Preprocessing and Analysis of Deep Mutational Scanning Data
|
software |
1.2.0 |
|
orthos
Bioc
|
`orthos` is an R package for variance decomposition using
conditional variational auto-encoders
|
software |
1.10.0 |
|
orthosData
Bioc
|
Data for the orthos package
|
experiment |
1.10.0 |
|
peakCombiner
Bioc
|
The R package to curate and merge enriched genomic regions into
consensus peak sets
|
software |
1.2.0 |
|
rnaseqDTU
Bioc
|
RNA-seq workflow for differential transcript usage following
Salmon quantification
|
workflows |
1.32.0 |
|
scRNAseq
Bioc
|
Collection of Public Single-Cell RNA-Seq Datasets
|
experiment |
2.26.0 |
|
sketchR
Bioc
|
An R interface for python subsampling/sketching algorithms
|
software |
1.8.0 |
|
treeclimbR
Bioc
|
An algorithm to find optimal signal levels in a tree
|
software |
1.8.0 |
|
tximeta
Bioc
|
Transcript Quantification Import with Automatic Metadata
|
software |
1.30.0 |
|
velociraptor
Bioc
|
Toolkit for Single-Cell Velocity
|
software |
1.22.0 |