alevinQC
Bioc currentGenerate QC Reports For Alevin Output
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
Generate QC reports summarizing the output from an alevin, alevin-fry, or simpleaf run. Reports can be generated as html or pdf files, or as shiny applications.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
41 16 exported
Complexity
5.2 avg / 40 max
Call network
41 nodes / 54 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,121
Files
96
Compiled share
20%
Has compiled src
Yes
Language breakdown
API
Exported functions
16
Internal functions
20
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.43
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
Yes
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
18.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-05-02
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
People
- Charlotte Soneson author maintainer
- Dongze He author
- Rob Patro author
- Avi Srivastava author