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derfinder

Bioc current

Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

v1.46.0 · software · Artistic-2.0
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Release Lineage

Entered 3.0 · Oct 14, 2014

Current · Requires R 4.6

1.0 In 24 of 49 releases 3.23

Description

This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › DifferentialExpression
Software › Technology › Sequencing
Software › Technology › Sequencing › RNASeq
Software › Technology › Sequencing › ChIPSeq
Software › BiologicalQuestion › DifferentialPeakCalling
Software
Software › ResearchField › Immunology › ImmunoOncology
Software › BiologicalQuestion › Coverage

Depended on by (8)

Bioconductor (8)

derfinderPlot megadepth recount regionReport GenomicState recountWorkflow brainflowprobes ODER

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