Bioconductor Packages

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

Adaptive Dropout Imputer (ADImpute)

Agreement of Differential Expression Analysis

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Affinity Network Fusion for Complex Patient Clustering

Association Plots

Ancestry Specific Allele Frequency Estimation

Predict Acetylated Lysine Sites

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

Automatic Statistical Identification in Complex Spectra

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation

An R package for fast computing for adaptively weighted fisher's method

visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics

A Functional Approach To Impute Genetically Regulated Expression

Investigates Allele Specific Expression

Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Accessing AlphaMissense Data Resources in R

Automated spectraL Processing System for NMR

Statistical analysis of sequins

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Bayesian Analysis of Differential Expression in RNA Sequencing Data

A Bayesian Approach for Geneset Selection

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BEAT - BS-Seq Epimutation Analysis Toolkit

Correction of batch effects in DNA methylation data

Performs Bayesian GWAS analysis for non-Gaussian data using BG2

Refitting diploid region profiles using a clustering procedure

Model higher-order methylation profiles

Baffling Recursive Algorithm for Isotope distributioN calculations

Software infrastructure for efficient representation of full genomes and their SNPs

Arabidopsis lyrata full genome (JGI version V1.0)

Full genome sequences for Apis mellifera (BeeBase assembly4)

Full genome sequences for Apis mellifera (Amel_HAv3.1)

Full genome sequences for Apis mellifera (UCSC version apiMel2)

Full masked genome sequences for Apis mellifera (UCSC version apiMel2)

Asparagus officinalis (Garden asparagus) full genome (NCBI version Aspof.V1)

Full genome sequences for Arabidopsis thaliana (TAIR version from April 23, 2008)

Full genome sequences for Arabidopsis thaliana (TAIR9)

Full genome sequences for Bos taurus (UCSC version bosTau3)

Full masked genome sequences for Bos taurus (UCSC version bosTau3)

Full genome sequences for Bos taurus (UCSC version bosTau4)