Bioconductor Packages

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

Reads from Two Lung Cancer Cell Lines

LymphoSeq annotation databases

M3Drop Example Data

Test datasets for the MACSr package

Experimental Data Package: MAQCsubset

Example data for MEDIPS and QSEA packages

R interface to EBI MGnify metagenomics resource

Example ChIP-Seq data for the MMDiff package

Data package for Multi-Omics Factor Analysis (MOFA)

Collection of public MERFISH datasets

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples

Collection of Public DNA Methylation Sequencing Datasets

Datasets for benchmarking in microbiome research

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Experimental Data for MutSeqR Examples

Data for the NCIgraph software package

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package

Nanopore RNA-Seq Example data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data required for getting the gene set scores with NetActivity package

expression and CGH data on breast cancer cell lines

Data for NxtIRF

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

Promoter Capture Hi-C data

expression and copy number data on clear cell renal carcinoma samples

H. sapiens background for PWMEnrich

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package

Data package for phylogenetic profile analysis using PhyloProfile tool

SELDI-TOF data of Breast cancer samples

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Test dataset for RMassBank

Example data for the RNAmodR package

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

An RRBS data set with 12 samples and 10,000 simulated DMRs

Gender data for the RUVnormalize package

Companion data package for the ReactomeGSA package

Standard regression functions in R enabled for parallel processing over large data-frames

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

RnaSeqSampleSizeData

Supporting datasets for SBGNview package