Bioconductor Packages

Refitting diploid region profiles using a clustering procedure

Model higher-order methylation profiles

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Gene network reconstruction

Batch Effects Correction with Unknown Subtypes

kallisto | bustools R utilities

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Single-cell RNA-seq batch effects correction methods interface

Batch Effects Quality Control Software

Identify Batch-Biased Spatially Variable Genes

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)

Binding site defintion based on iCLIP data

BioCarta Pathway Images

Functional Similarities

Bioinformatics Genetic Algorithm (BioGA)

Model-View-Controller (MVC) Classes That Use Biobase

Biological Network Analysis in R

Biological Network Reconstruction Omnibus

Routines for the functional analysis of biological networks

Biobase: Base functions for Bioconductor

Read and write GFF and GTF files

Programmatic Access to the Azul API

Utility and internal functions for Bioconductor packages

Write, containerize, publish and version Quarto books with Bioconductor

Functions to process a bioconductor build report database

Bioconductor-specific package checks

Illustration of FHIR ingestion and transformation using R

Manage Files Across Sessions

S4 generic functions used in Bioconductor

basilisk and hail

View Bioconductor Package Maintainer Information Interactively

Bioconductor facilities for parallel evaluation

An interactive Shiny dashboard for Bioconductor package maintainers

Collection of simple tools for learning about Bioconductor Packages

Representing Different Biological Sets

interface to python sklearn via Rstudio reticulate

Set the appropriate version of Bioconductor packages

Tools to aid the development of Bioconductor Workflow packages

Efficient manipulation of biological strings

This R package for performing module repertoire analyses and generating fingerprint representations

Cohort-aware methods for intrinsic molecular subtyping of breast cancer

Code for using BridgeDb identifier mapping framework from within R

BrowserViz: interactive R/browser graphics using websockets and JSON