Bioconductor Packages

Gene expression enrichment in human brain regions

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

Algorithms for Calculating Microarray Enrichment (ACME)

ADAM: Activity and Diversity Analysis Module

Activity and Diversity Analysis Module Graphical User Interface

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

Adaptive Dropout Imputer (ADImpute)

EnsDbs for AnnotationHub

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

AnaLysis routines for ePigenomicS data

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Microbiome differential abudance and correlation analyses with bias correction

Affinity Network Fusion for Complex Patient Clustering

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Association Plots

Adaptive Robust Regression normalization for Illumina methylation data

Ancestry Specific Allele Frequency Estimation

ASCETIC

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

Analysis Tools for scATACseq Data with CoGAPS

ATAC-seq Quality Control

Transcription Factor Enrichment Analysis for ATAC-seq

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation

An R package for fast computing for adaptively weighted fisher's method

visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics

A Functional Approach To Impute Genetically Regulated Expression

Affymetrix Quality Assessment and Analysis Tool

Analyze and correct probe positional bias in microarray data due to RNA degradation

Processing and Differential Expression Analysis of Agilent microRNA chips

Accessing AlphaMissense Data Resources in R

Automated spectraL Processing System for NMR

Expose the vrs_anvil_toolkit Python package via R

A framework for sharing interactive data and plots from R through the web

Statistical analysis of sequins

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Manipulation of SQLite-based annotations in Bioconductor

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

geneChip Analysis Package